{
  "_id": "6a1042afacfb0bcc41c9dc37",
  "Package": "assignR",
  "Type": "Package",
  "Title": "Infer Geographic Origin from Isotopic Data",
  "Version": "2.4.3",
  "Authors@R": "c(person(given = \"Chao\",\nfamily = \"Ma\",\nrole = \"aut\"),\nperson(given = \"Gabe\",\nfamily = \"Bowen\",\nrole = c(\"aut\", \"cre\"),\nemail = \"gabe.bowen@utah.edu\"))",
  "Description": "Routines for re-scaling isotope maps using known-origin\ntissue isotope data, assigning origin of unknown samples, and\nsummarizing and assessing assignment results. Methods are\nadapted from Wunder (2010, in ISBN:9789048133536) and Vander\nZanden, H. B. et al. (2014) <doi:10.1111/2041-210X.12229> as\ndescribed in Ma, C. et al. (2020)\n<doi:10.1111/2041-210X.13426>.",
  "VignetteBuilder": "knitr",
  "License": "GPL-3",
  "Language": "en-US",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-11 07:11:42 UTC",
    "User": "root"
  },
  "Author": "Chao Ma [aut], Gabe Bowen [aut, cre]",
  "Maintainer": "Gabe Bowen <gabe.bowen@utah.edu>",
  "Config/pak/sysreqs": "libgdal-dev gdal-bin libgeos-dev libproj-dev\nlibsqlite3-dev",
  "Repository": "https://bumbanian.r-universe.dev",
  "Date/Publication": "2024-12-04 15:20:09 UTC",
  "RemoteUrl": "https://github.com/cran/assignR",
  "RemoteRef": "HEAD",
  "RemoteSha": "be770e1323b65037d71b27c2a028cee866f76e20",
  "MD5sum": "e47032c6a059b74850b70cb4278ff9c3",
  "_user": "bumbanian",
  "_type": "src",
  "_file": "assignR_2.4.3.tar.gz",
  "_fileid": "f2221b324036a8841e77465099dee11478d44f94911a4088bdb1e18b2fb41834",
  "_filesize": 2520439,
  "_sha256": "f2221b324036a8841e77465099dee11478d44f94911a4088bdb1e18b2fb41834",
  "_created": "2026-05-11T07:11:42.000Z",
  "_published": "2026-05-22T11:49:03.024Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77373422571,
      "time": 237,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6912385822"
    },
    {
      "job": 77373422936,
      "time": 248,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6912390615"
    },
    {
      "job": 77373422574,
      "time": 295,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6912392873"
    },
    {
      "job": 77373422720,
      "time": 259,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6912383398"
    },
    {
      "job": 77373422204,
      "time": 308,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6912316528"
    },
    {
      "job": 77373422275,
      "time": 140,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7159758862"
    },
    {
      "job": 77373422554,
      "time": 646,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6912502457"
    },
    {
      "job": 77373423099,
      "time": 668,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6912508943"
    },
    {
      "job": 77373422810,
      "time": 180,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6912368889"
    }
  ],
  "_buildurl": "https://github.com/r-universe/bumbanian/actions/runs/25655520442",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/assignR",
  "_commit": {
    "id": "be770e1323b65037d71b27c2a028cee866f76e20",
    "author": "Gabe Bowen <gabe.bowen@utah.edu>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 2.4.3\n",
    "time": 1733325609
  },
  "_maintainer": {
    "name": "Gabe Bowen",
    "email": "gabe.bowen@utah.edu",
    "login": "bumbanian",
    "uuid": 9221175
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.0",
      "role": "Depends"
    },
    {
      "package": "mvnfast",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "geosphere",
      "role": "Imports"
    },
    {
      "package": "terra",
      "version": ">= 1.7-23",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "covr",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "bumbanian",
      "count": 14,
      "uuid": 9221175
    }
  ],
  "_userbio": {
    "uuid": 9221175,
    "type": "user",
    "name": "Gabriel J. Bowen"
  },
  "_downloads": {
    "count": 361,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/assignR"
  },
  "_mentions": 1,
  "_searchresults": 37,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/assignR.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_realowner": "bumbanian",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.1.3",
      "date": "2019-11-06"
    },
    {
      "version": "1.2.0",
      "date": "2020-04-21"
    },
    {
      "version": "1.2.1",
      "date": "2020-06-03"
    },
    {
      "version": "2.0.0",
      "date": "2021-01-10"
    },
    {
      "version": "2.1.0",
      "date": "2021-06-10"
    },
    {
      "version": "2.1.1",
      "date": "2021-06-22"
    },
    {
      "version": "2.2.0",
      "date": "2022-02-24"
    },
    {
      "version": "2.2.1",
      "date": "2022-07-12"
    },
    {
      "version": "2.2.2",
      "date": "2023-03-25"
    },
    {
      "version": "2.2.3",
      "date": "2023-04-12"
    },
    {
      "version": "2.3.0",
      "date": "2023-06-06"
    },
    {
      "version": "2.4.0",
      "date": "2023-09-01"
    },
    {
      "version": "2.4.1",
      "date": "2024-05-30"
    },
    {
      "version": "2.4.3",
      "date": "2024-12-04"
    }
  ],
  "_exports": [
    "calRaster",
    "getIsoscapes",
    "isoStack",
    "jointP",
    "oddsRatio",
    "pdRaster",
    "QA",
    "qtlRaster",
    "refTrans",
    "subOrigData",
    "unionP",
    "wDist"
  ],
  "_datasets": [
    {
      "name": "stds",
      "title": "data: documentation of keratin H and O isotope standard calibrations",
      "object": "stds",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "assignR",
      "title": "Tools for inferring geographic origin from isotopic data",
      "topics": [
        "assignR"
      ]
    },
    {
      "page": "c.wDist",
      "title": "Combine method for wDist objects",
      "topics": [
        "c.wDist"
      ]
    },
    {
      "page": "calRaster",
      "title": "Rescale isoscape using linear regression",
      "topics": [
        "calRaster"
      ]
    },
    {
      "page": "d2h_lrNA",
      "title": "data: low resolution North American growing season H isoscape",
      "topics": [
        "d2h_lrNA"
      ]
    },
    {
      "page": "getIsoscapes",
      "title": "Download and unpack isoscapes from the web",
      "topics": [
        "getIsoscapes"
      ]
    },
    {
      "page": "isoStack",
      "title": "Stack isoscapes",
      "topics": [
        "isoStack"
      ]
    },
    {
      "page": "jointP",
      "title": "Joint probability of origin",
      "topics": [
        "jointP"
      ]
    },
    {
      "page": "knownOrig",
      "title": "data: database of H and O isotope data for tissues of known origin",
      "topics": [
        "knownOrig"
      ]
    },
    {
      "page": "naMap",
      "title": "data: North America boundary map",
      "topics": [
        "naMap"
      ]
    },
    {
      "page": "oddsRatio",
      "title": "Odds ratio of points or regions",
      "topics": [
        "oddsRatio"
      ]
    },
    {
      "page": "pdRaster",
      "title": "Probability of origin surfaces",
      "topics": [
        "pdRaster"
      ]
    },
    {
      "page": "plot.isoStack",
      "title": "Plot method for stacked isoscapes",
      "topics": [
        "plot.isoStack"
      ]
    },
    {
      "page": "plot.QA",
      "title": "Plot quality metrics for geographic assignments",
      "topics": [
        "plot.QA"
      ]
    },
    {
      "page": "plot.wDist",
      "title": "Plot weighted distance and bearing distributions",
      "topics": [
        "plot.wDist"
      ]
    },
    {
      "page": "QA",
      "title": "Quality assessment of geographic assignments",
      "topics": [
        "QA"
      ]
    },
    {
      "page": "qtlRaster",
      "title": "Sample assignment using thresholds",
      "topics": [
        "qtlRaster"
      ]
    },
    {
      "page": "refTrans",
      "title": "Transform reference scale of data",
      "topics": [
        "refTrans"
      ]
    },
    {
      "page": "sr_MI",
      "title": "data: low resolution locally weathered Sr isoscape for Michigan",
      "topics": [
        "sr_MI"
      ]
    },
    {
      "page": "states",
      "title": "data: outline of US states",
      "topics": [
        "states"
      ]
    },
    {
      "page": "stds",
      "title": "data: documentation of keratin H and O isotope standard calibrations",
      "topics": [
        "stds"
      ]
    },
    {
      "page": "subOrigData",
      "title": "Extract known origin sample data",
      "topics": [
        "subOrigData"
      ]
    },
    {
      "page": "unionP",
      "title": "Union probability of origin",
      "topics": [
        "unionP"
      ]
    },
    {
      "page": "wDist",
      "title": "Probability weighted distances and bearings",
      "topics": [
        "wDist"
      ]
    },
    {
      "page": "wrld_simpl",
      "title": "data: world boundary map",
      "topics": [
        "wrld_simpl"
      ]
    }
  ],
  "_readme": "https://github.com/cran/assignR/raw/HEAD/README.md",
  "_rundeps": [
    "BH",
    "geosphere",
    "mvnfast",
    "Rcpp",
    "RcppArmadillo",
    "rlang",
    "terra"
  ],
  "_vignettes": [
    {
      "source": "assignR.Rmd",
      "filename": "assignR.html",
      "title": "assignR Examples",
      "author": "Gabe Bowen, Chao Ma",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Single-isoscape Analysis",
        "Multi-isoscape Analysis",
        "Post-hoc Analysis",
        "Odds Ratio",
        "Distance and Direction",
        "Assignment",
        "Summarization",
        "Quality Analysis"
      ],
      "created": "2019-11-06 12:50:02",
      "modified": "2023-06-06 14:30:02",
      "commits": 8
    }
  ],
  "_score": 3.2671717284030137,
  "_indexed": true,
  "_nocasepkg": "assignr",
  "_universes": [
    "bumbanian"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.4.3",
      "date": "2026-05-11T07:14:22.000Z",
      "distro": "noble",
      "commit": "be770e1323b65037d71b27c2a028cee866f76e20",
      "fileid": "3c9034a268aac310a2eabf24b9e331fac60897e807d36b4eaf284f57a668442b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bumbanian/actions/runs/25655520442"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.4.3",
      "date": "2026-05-11T07:14:27.000Z",
      "distro": "noble",
      "commit": "be770e1323b65037d71b27c2a028cee866f76e20",
      "fileid": "a9c7e7a3a6e6fb83491161f3640256033a0cf16cabe5a96a2cd70700f978db61",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bumbanian/actions/runs/25655520442"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.4.3",
      "date": "2026-05-11T07:14:58.000Z",
      "commit": "be770e1323b65037d71b27c2a028cee866f76e20",
      "fileid": "93b185e8913a88f3709f6d5a7d5d1bb7209017e39ed4dcba2f7002c4c9e5b0b1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bumbanian/actions/runs/25655520442"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.4.3",
      "date": "2026-05-11T07:14:26.000Z",
      "commit": "be770e1323b65037d71b27c2a028cee866f76e20",
      "fileid": "27c133208475a41ef3d880639126db7588a62e13518c71d169030c9a79b3c9ae",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bumbanian/actions/runs/25655520442"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.4.3",
      "date": "2026-05-11T07:20:53.000Z",
      "commit": "be770e1323b65037d71b27c2a028cee866f76e20",
      "fileid": "10e5fd3d0897171fe0d256c4c54eb4346af2f7adcfd5600cbef2b00fd27ce341",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bumbanian/actions/runs/25655520442"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.4.3",
      "date": "2026-05-11T07:21:05.000Z",
      "commit": "be770e1323b65037d71b27c2a028cee866f76e20",
      "fileid": "7ac9042bbb017d73c91d97db1ca4c6a7dcde4c9210ed5e0841164b9e9b9ebdf0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bumbanian/actions/runs/25655520442"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.4.3",
      "date": "2026-05-11T07:13:17.000Z",
      "commit": "be770e1323b65037d71b27c2a028cee866f76e20",
      "fileid": "59ed996ec8544ca53e9bff59cc7dc8f28088f890e576dd31ec9862f9e6b79470",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bumbanian/actions/runs/25655520442"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.4.3",
      "date": "2026-05-22T11:48:41.000Z",
      "commit": "be770e1323b65037d71b27c2a028cee866f76e20",
      "fileid": "9effeae810e643a6979c67c0178c50953a344d756f99b2bdcca06b1432026a3c",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bumbanian/actions/runs/25655520442"
    }
  ]
}